Index

_

_check_swm_stats() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) _data_splitter_cls (smoother.models.reduction._spanvi.SpatialANVI attribute) (smoother.models.reduction._spvae.SpatialVAE attribute) (smoother.models.reduction.SpatialANVI attribute) (smoother.models.reduction.SpatialVAE attribute) _decomposition_sp() (in module smoother.models.reduction._spcpd) _deconv_torch() (in module smoother.models.deconv) _dwls_loss() (in module smoother.models.deconv) _get_cost_matrix() (in module smoother.visualization) _gram_schmidt() (smoother.models.reduction._sppca.SpatialPCA method) (smoother.models.reduction.SpatialPCA method) _init_with_svd() (smoother.models.reduction._sppca.SpatialPCA method) (smoother.models.reduction.SpatialPCA method) _module_cls (smoother.models.reduction._spanvi.SpatialANVI attribute) (smoother.models.reduction._spvae.SpatialVAE attribute) (smoother.models.reduction.SpatialANVI attribute) (smoother.models.reduction.SpatialVAE attribute) _mono_exp() (in module smoother.utils) (in module smoother.weights)

_nu_svr_loss() (in module smoother.models.deconv) _pca() (in module smoother.utils) (in module smoother.weights) _reduce_dim_ae() (smoother.models.reduction._spae.AutoEncoderClass class method) _sanity_check() (smoother.losses.SpatialLoss method) (smoother.models.deconv.SpatialLoss method) (smoother.models.impute.SpatialLoss method) (smoother.models.reduction._spae.SpatialLoss method) (smoother.models.reduction._spanvi.SpatialLoss method) (smoother.models.reduction._spcpd.SpatialLoss method) (smoother.models.reduction._sppca.SpatialLoss method) (smoother.models.reduction._spvae.SpatialLoss method) (smoother.SpatialLoss method) _standardize_inv_cov() (in module smoother.weights) _train_runner_cls (smoother.models.reduction._spanvi.SpatialANVI attribute) (smoother.models.reduction.SpatialANVI attribute) _training_plan_cls (smoother.models.reduction._spanvi.SpatialANVI attribute) (smoother.models.reduction.SpatialANVI attribute) _z_score() (in module smoother.utils) (in module smoother.weights)

A

add_gamma_noises() (in module smoother.simulation.utils)

align_clusters() (in module smoother.visualization) AutoEncoderClass (class in smoother.models.reduction._spae)

B

betti_prior (smoother.losses.TopLoss attribute) (smoother.models.deconv.TopLoss attribute)

broadcast_labels() (in module smoother.models.reduction._spanvi) (in module smoother.models.reduction._utils)

C

C (smoother.models.deconv.NuSVRConvex attribute) (smoother.models.deconv.NuSVRTorch attribute) cal_counts_ct() (in module smoother.simulation.utils) cal_membership_value() (in module smoother.simulation.histology) calc_corr_decay_stats() (smoother.losses.SpatialLoss method) (smoother.models.deconv.SpatialLoss method) (smoother.models.impute.SpatialLoss method) (smoother.models.reduction._spae.SpatialLoss method) (smoother.models.reduction._spanvi.SpatialLoss method) (smoother.models.reduction._spcpd.SpatialLoss method) (smoother.models.reduction._sppca.SpatialLoss method) (smoother.models.reduction._spvae.SpatialLoss method) (smoother.SpatialLoss method) calc_feature_similarity() (in module smoother.utils) (in module smoother.weights) calc_feature_similarity_sparse() (in module smoother.utils) (in module smoother.weights) calc_histology_similarity() (in module smoother.utils) (in module smoother.weights) calc_histology_similarity_sparse() (in module smoother.utils) (in module smoother.weights) calc_weights_dist() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) calc_weights_knn() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) check_positive_definite() (smoother.ContrastiveSpatialLoss method) (smoother.losses.ContrastiveSpatialLoss method)

clr_stable() (in module smoother.visualization) cluster_and_plot_celltype_props() (in module smoother.visualization) cluster_features() (in module smoother.visualization) conc_cir() (in module smoother.simulation.gp) confidences (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute) config (smoother.losses.SpatialWeightMatrix attribute) (smoother.SpatialWeightMatrix attribute) (smoother.weights.SpatialWeightMatrix attribute) ContrastiveSpatialLoss (class in smoother) (class in smoother.losses) coordinate_to_weights_dist_dense() (in module smoother.weights) coordinate_to_weights_dist_sparse() (in module smoother.weights) coordinate_to_weights_knn_dense() (in module smoother.simulation.utils) (in module smoother.weights) coordinate_to_weights_knn_sparse() (in module smoother.weights) coords_xy (smoother.losses.TopLoss attribute) (smoother.models.deconv.TopLoss attribute) CPDecomposition (class in smoother.models.reduction._spcpd) create_spatial_adata() (in module smoother.simulation.utils)

D

decode() (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._spae.SpatialAutoEncoder method) (smoother.models.reduction.SpatialAutoEncoder method) decomposition_sp() (smoother.models.reduction._spcpd.CPDecomposition method) deconv() (smoother.models.deconv.DeconvModelConvex method) (smoother.models.deconv.DeconvModelTorch method) deconv_configs (smoother.models.deconv.DeconvModelConvex attribute) (smoother.models.deconv.DeconvModelTorch attribute) deconv_time (smoother.models.deconv.DeconvModelConvex attribute) (smoother.models.deconv.DeconvModelTorch attribute)

DeconvModel (class in smoother.models.deconv) DeconvModelConvex (class in smoother.models.deconv) DeconvModelTorch (class in smoother.models.deconv) diag_block_mat_boolindex() (in module smoother.simulation.utils) dim_in (smoother.models.deconv.DeconvModelConvex attribute) (smoother.models.deconv.DeconvModelTorch attribute) dim_out (smoother.models.deconv.DeconvModelConvex attribute) (smoother.models.deconv.DeconvModelTorch attribute) DWLS() (in module smoother.models.deconv) DWLSConvex (class in smoother.models.deconv) DWLSTorch (class in smoother.models.deconv)

E

encode() (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._spae.SpatialAutoEncoder method) (smoother.models.reduction.SpatialAutoEncoder method) enumerate_discrete() (in module smoother.models.reduction._utils) epsilon (smoother.models.deconv.LogNormRegTorch attribute) (smoother.models.deconv.NuSVRConvex attribute) (smoother.models.deconv.NuSVRTorch attribute) estimate_confidence() (smoother.losses.SpatialLoss method) (smoother.models.deconv.SpatialLoss method) (smoother.models.impute.SpatialLoss method) (smoother.models.reduction._spae.SpatialLoss method) (smoother.models.reduction._spanvi.SpatialLoss method) (smoother.models.reduction._spcpd.SpatialLoss method) (smoother.models.reduction._sppca.SpatialLoss method) (smoother.models.reduction._spvae.SpatialLoss method) (smoother.SpatialLoss method)

estimate_decay_rate() (in module smoother.utils) (in module smoother.weights) extract_features_from_image() (in module smoother.simulation.histology)

F

final_sanity_check() (smoother.models.deconv.DeconvModelTorch method) (smoother.models.deconv.LinearRegressionTorch method) (smoother.models.deconv.NuSVRTorch method) (smoother.models.impute.ImputeTorch method) fixed_obs (smoother.models.impute.ImputeModel attribute) forward() (smoother.ContrastiveSpatialLoss method) (smoother.losses.ContrastiveSpatialLoss method) (smoother.losses.SpatialLoss method) (smoother.losses.TopLoss method) (smoother.models.deconv.LinearRegressionTorch method) (smoother.models.deconv.SpatialLoss method) (smoother.models.deconv.TopLoss method) (smoother.models.impute.ImputeTorch method) (smoother.models.impute.SpatialLoss method) (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._spae.SpatialLoss method) (smoother.models.reduction._spanvi.SpatialLoss method) (smoother.models.reduction._spcpd.CPDecomposition method) (smoother.models.reduction._spcpd.SpatialLoss method) (smoother.models.reduction._sppca.SpatialLoss method) (smoother.models.reduction._sppca.SpatialPCA method) (smoother.models.reduction._spvae.SpatialLoss method) (smoother.models.reduction.SpatialPCA method) (smoother.SpatialLoss method)

from_rna_model() (smoother.models.reduction._spae.SpatialAutoEncoder class method) (smoother.models.reduction._spanvi.SpatialANVI class method) (smoother.models.reduction._sppca.SpatialPCA class method) (smoother.models.reduction._spvae.SpatialVAE class method) (smoother.models.reduction.SpatialANVI class method) (smoother.models.reduction.SpatialAutoEncoder class method) (smoother.models.reduction.SpatialPCA class method) (smoother.models.reduction.SpatialVAE class method) from_scanpy() (smoother.models.reduction._sppca.SpatialPCA class method) (smoother.models.reduction.SpatialPCA class method) from_vae() (smoother.models.reduction._spanvi.SPANVAE class method) (smoother.models.reduction._spvae.SPVAE class method)

G

generate_grid() (in module smoother.simulation.gp) get_abundances() (in module smoother.simulation.gp) get_abundances_circ() (in module smoother.simulation.gp) get_abundances_hist() (in module smoother.simulation.gp) get_features_matrix() (in module smoother.simulation.histology) get_histology_vector() (in module smoother.utils) (in module smoother.weights) get_inv_cov() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) get_latent_representation() (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._sppca.SpatialPCA method) (smoother.models.reduction.SpatialPCA method) get_loss_fn() (smoother.models.reduction._spcpd.CPDecomposition method) get_max_epochs_heuristic() (in module smoother.models.reduction._spanvi) (in module smoother.models.reduction._utils) get_model_loss() (smoother.models.deconv.DeconvModel method) (smoother.models.deconv.DeconvModelConvex method) (smoother.models.deconv.LinearRegressionConvex method) (smoother.models.deconv.LinearRegressionTorch method) get_model_loss_fn() (smoother.models.deconv.DWLSTorch method) (smoother.models.deconv.LinearRegressionTorch method) (smoother.models.deconv.LogNormRegTorch method) (smoother.models.deconv.NuSVRTorch method) get_neighbor_quantile_value_by_k() (in module smoother.losses) (in module smoother.utils) (in module smoother.weights) get_orth_loss() (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._spae.SpatialAutoEncoder method) (smoother.models.reduction.SpatialAutoEncoder method)

get_props() (smoother.models.deconv.DeconvModel method) (smoother.models.deconv.DeconvModelConvex method) (smoother.models.deconv.LinearRegressionConvex method) (smoother.models.deconv.LinearRegressionTorch method) get_recon_loss() (smoother.models.impute.ImputeConvex method) (smoother.models.impute.ImputeModel method) (smoother.models.impute.ImputeTorch method) (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._spae.SpatialAutoEncoder method) (smoother.models.reduction.SpatialAutoEncoder method) get_results() (smoother.models.impute.ImputeConvex method) (smoother.models.impute.ImputeModel method) (smoother.models.impute.ImputeTorch method) get_sp_loss() (smoother.models.deconv.DeconvModel method) (smoother.models.deconv.DeconvModelConvex method) (smoother.models.deconv.LinearRegressionConvex method) (smoother.models.deconv.LinearRegressionTorch method) (smoother.models.impute.ImputeConvex method) (smoother.models.impute.ImputeModel method) (smoother.models.impute.ImputeTorch method) (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._spae.SpatialAutoEncoder method) (smoother.models.reduction.SpatialAutoEncoder method) get_top_loss() (smoother.models.deconv.DeconvModelTorch method) (smoother.models.deconv.LinearRegressionTorch method) grouped_obs_mean() (in module smoother.simulation.utils)

I

ilr_stable() (in module smoother.visualization) ImageContainer (in module smoother.simulation.histology) impute() (smoother.models.impute.ImputeConvex method) (smoother.models.impute.ImputeTorch method) impute_configs (smoother.models.impute.ImputeModel attribute) impute_flag (smoother.models.impute.ImputeModel attribute) impute_time (smoother.models.impute.ImputeModel attribute) ImputeConvex (class in smoother.models.impute) ImputeModel (class in smoother.models.impute) ImputeTorch (class in smoother.models.impute) init_with_lr_sol() (smoother.models.deconv.DeconvModelTorch method) (smoother.models.deconv.LinearRegressionTorch method) init_with_tensorly() (smoother.models.reduction._spcpd.CPDecomposition method) inv_cov (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute)

inv_cov_2d_sp (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute) inv_covs (smoother.losses.SpatialWeightMatrix attribute) (smoother.SpatialWeightMatrix attribute) (smoother.weights.SpatialWeightMatrix attribute) iterate() (in module smoother.models.reduction._utils)

K

kernel() (in module smoother.simulation.gp)

kl_loss() (in module smoother.losses) kl_loss_scipy() (in module smoother.losses)

L

LinearRegression() (in module smoother.models.deconv) LinearRegressionConvex (class in smoother.models.deconv) LinearRegressionTorch (class in smoother.models.deconv) load_adata() (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._sppca.SpatialPCA method) (smoother.models.reduction.SpatialPCA method)

logger (in module smoother.models.reduction._spanvi) LogNormReg() (in module smoother.models.deconv) LogNormRegTorch (class in smoother.models.deconv) loss() (smoother.models.reduction._spanvi.SPANVAE method) (smoother.models.reduction._spvae.SPVAE method) loss_mode (smoother.models.deconv.NuSVRConvex attribute) (smoother.models.deconv.NuSVRTorch attribute)

M

max_weights (smoother.models.deconv.DWLSConvex attribute) (smoother.models.deconv.DWLSTorch attribute) model_name (smoother.models.deconv.DeconvModelConvex attribute) (smoother.models.deconv.DeconvModelTorch attribute) module smoother smoother.losses smoother.models smoother.models.deconv smoother.models.impute smoother.models.reduction smoother.models.reduction._spae smoother.models.reduction._spanvi smoother.models.reduction._spcpd smoother.models.reduction._sppca smoother.models.reduction._spvae smoother.models.reduction._utils smoother.simulation smoother.simulation.gp smoother.simulation.histology smoother.simulation.utils smoother.utils smoother.visualization smoother.weights

N

n_all (smoother.models.impute.ImputeModel attribute) n_feature (smoother.models.impute.ImputeModel attribute) n_missing (smoother.models.impute.ImputeModel attribute) n_obs (smoother.models.impute.ImputeModel attribute) NNLS() (in module smoother.models.deconv) NNLSConvex (class in smoother.models.deconv) NNLSTorch (class in smoother.models.deconv) nonneg (smoother.models.deconv.DeconvModelConvex attribute) (smoother.models.deconv.DeconvModelTorch attribute) (smoother.models.impute.ImputeModel attribute)

normalize_minmax() (in module smoother.losses) (in module smoother.utils) (in module smoother.visualization) (in module smoother.weights) nu (smoother.models.deconv.NuSVRConvex attribute) (smoother.models.deconv.NuSVRTorch attribute) NuSVR() (in module smoother.models.deconv) NuSVRConvex (class in smoother.models.deconv) NuSVRTorch (class in smoother.models.deconv)

P

pdfn (smoother.losses.TopLoss attribute) (smoother.models.deconv.TopLoss attribute) plot_celltype_props() (in module smoother.visualization) plot_similarity_cdf() (in module smoother.utils) (in module smoother.weights) plot_similarity_decay() (in module smoother.utils) (in module smoother.weights) plot_spatial() (in module smoother.simulation.gp) plot_spatial_clusters() (in module smoother.visualization)

prior (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute)

Q

quadratic_loss() (in module smoother.losses) quantile_feature_similarity_decay() (in module smoother.utils) (in module smoother.weights)

quantile_feature_similarity_neighbor() (in module smoother.utils) (in module smoother.weights)

R

random_gp() (in module smoother.simulation.gp) recon_loss_exp (smoother.models.impute.ImputeConvex attribute) reduce() (smoother.models.reduction._spae.AutoEncoderClass method) (smoother.models.reduction._sppca.SpatialPCA method) (smoother.models.reduction.SpatialPCA method) reshape_coefs() (smoother.losses.TopLoss method) (smoother.models.deconv.TopLoss method) rho (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute)

S

sample_cell_indices() (in module smoother.simulation.utils) sample_circ() (in module smoother.simulation.gp) sample_gp() (in module smoother.simulation.gp) sample_hist() (in module smoother.simulation.gp) scale_by_expr() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) scale_by_histology() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) scale_by_identity() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) scale_by_similarity() (smoother.losses.SpatialWeightMatrix method) (smoother.SpatialWeightMatrix method) (smoother.weights.SpatialWeightMatrix method) set_lambda_only() (smoother.models.deconv.LinearRegressionConvex method) set_model_loss() (smoother.models.deconv.DWLSConvex method) (smoother.models.deconv.LinearRegressionConvex method) (smoother.models.deconv.NuSVRConvex method) set_params() (smoother.models.deconv.DeconvModelConvex method) (smoother.models.deconv.DeconvModelTorch method) (smoother.models.deconv.LinearRegressionConvex method) (smoother.models.deconv.LinearRegressionTorch method) (smoother.models.deconv.NuSVRConvex method) (smoother.models.impute.ImputeModel method) set_params_online_update() (in module smoother.models.reduction._spanvi) (in module smoother.models.reduction._spvae) (in module smoother.models.reduction._utils) set_recon_loss() (smoother.models.impute.ImputeConvex method) set_sp_loss() (smoother.models.deconv.LinearRegressionConvex method) (smoother.models.impute.ImputeConvex method) set_variables() (smoother.models.impute.ImputeConvex method) (smoother.models.impute.ImputeModel method) (smoother.models.impute.ImputeTorch method) smooth_by_neighbors() (in module smoother.simulation.utils) smoother module smoother.losses module smoother.models module smoother.models.deconv module smoother.models.impute module smoother.models.reduction module smoother.models.reduction._spae module smoother.models.reduction._spanvi module smoother.models.reduction._spcpd module smoother.models.reduction._sppca module smoother.models.reduction._spvae module smoother.models.reduction._utils module smoother.simulation module

smoother.simulation.gp module smoother.simulation.histology module smoother.simulation.utils module smoother.utils module smoother.visualization module smoother.weights module sp_loss_exp (smoother.models.impute.ImputeConvex attribute) SPANVAE (class in smoother.models.reduction._spanvi) sparse_quadratic_loss() (in module smoother.losses) sparse_weights_to_inv_cov() (in module smoother.weights) spatial_loss_all (smoother.models.impute.ImputeModel attribute) spatial_weights (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute) SpatialANVI (class in smoother.models.reduction) (class in smoother.models.reduction._spanvi) SpatialAutoEncoder (class in smoother.models.reduction) (class in smoother.models.reduction._spae) SpatialLoss (class in smoother) (class in smoother.losses) (class in smoother.models.deconv) (class in smoother.models.impute) (class in smoother.models.reduction._spae) (class in smoother.models.reduction._spanvi) (class in smoother.models.reduction._spcpd) (class in smoother.models.reduction._sppca) (class in smoother.models.reduction._spvae) SpatialPCA (class in smoother.models.reduction) (class in smoother.models.reduction._sppca) SpatialVAE (class in smoother.models.reduction) (class in smoother.models.reduction._spvae) SpatialWeightMatrix (class in smoother) (class in smoother.losses) (class in smoother.weights) SPVAE (class in smoother.models.reduction._spvae) standardize_cov (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute) swm (smoother.losses.SpatialWeightMatrix attribute) (smoother.SpatialWeightMatrix attribute) (smoother.weights.SpatialWeightMatrix attribute) swm_scaled (smoother.losses.SpatialWeightMatrix attribute) (smoother.SpatialWeightMatrix attribute) (smoother.weights.SpatialWeightMatrix attribute)

T

topfn (smoother.losses.TopLoss attribute) (smoother.models.deconv.TopLoss attribute) TopLoss (class in smoother.losses) (class in smoother.models.deconv)

train() (smoother.models.reduction._spanvi.SpatialANVI method) (smoother.models.reduction._spvae.SpatialVAE method) (smoother.models.reduction.SpatialANVI method) (smoother.models.reduction.SpatialVAE method)

U

use_bias (smoother.models.deconv.DeconvModelTorch attribute) use_sparse (smoother.losses.SpatialLoss attribute) (smoother.models.deconv.SpatialLoss attribute) (smoother.models.impute.SpatialLoss attribute) (smoother.models.reduction._spae.SpatialLoss attribute) (smoother.models.reduction._spanvi.SpatialLoss attribute) (smoother.models.reduction._spcpd.SpatialLoss attribute) (smoother.models.reduction._sppca.SpatialLoss attribute) (smoother.models.reduction._spvae.SpatialLoss attribute) (smoother.SpatialLoss attribute)

V

var_all (smoother.models.impute.ImputeConvex attribute) (smoother.models.impute.ImputeModel attribute) (smoother.models.impute.ImputeTorch attribute) var_missing (smoother.models.impute.ImputeConvex attribute) (smoother.models.impute.ImputeModel attribute) (smoother.models.impute.ImputeTorch attribute)

var_obs (smoother.models.impute.ImputeConvex attribute) (smoother.models.impute.ImputeModel attribute) (smoother.models.impute.ImputeTorch attribute)

W

weights_to_inv_cov() (in module smoother.weights)

Y

y_obs (smoother.models.impute.ImputeModel attribute)